{ "_id": "6ad721724b18b90089999182", "Package": "RSE", "Type": "Package", "Title": "Number of Newly Discovered Rare Species Estimation", "Version": "1.3", "Date": "2018-11-03", "Author": "Youhua Chen,Tsung-Jen Shen", "Maintainer": "Youhua Chen ", "Description": "A Bayesian-weighted estimator and two unweighted\nestimators are developed to estimate the number of newly found\nrare species in additional ecological samples. Among these\nmethods, the Bayesian-weighted estimator and an unweighted\n(Chao-derived) estimator are of high accuracy and recommended\nfor practical applications. Technical details of the proposed\nestimators have been well described in the following paper:\nShen TJ, Chen YH (2018) A Bayesian weighted approach to\npredicting the number of newly discovered rare species.\nConservation Biology, In press.", "License": "GPL-3", "RoxygenNote": "6.1.0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-20 08:04:55 UTC", "User": "root" }, "Repository": "https://youhuachen.r-universe.dev", "Date/Publication": "2018-11-20 04:40:03 UTC", "RemoteUrl": "https://github.com/cran/RSE", "RemoteRef": "HEAD", "RemoteSha": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "_user": "youhuachen", "_type": "src", "_file": "RSE_1.3.tar.gz", "_fileid": "https://r2.ropensci.org/ccc884523554c4b0f1897d2f0a705702c42c7f0357c05facd7ba597df0ef48ef", "_filesize": 144963, "_sha256": "ccc884523554c4b0f1897d2f0a705702c42c7f0357c05facd7ba597df0ef48ef", "_expires": "2027-01-28T08:08:16.000Z", "_created": "2026-10-20T08:04:55.000Z", "_published": "2026-10-20T08:08:18.708Z", "_upstream": "https://github.com/cran/RSE", "_status": "success", "_maintainer": { "name": "Youhua Chen", "email": "haydi@126.com", "login": "youhuachen", "description": "Chen's lab has broad interests in biodiversity, conservation and bioinformatics", "uuid": 35915425 }, "_jobs": [ { "job": 118521829959, "time": 130, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12250365250" }, { "job": 118521830200, "time": 105, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12248839296" }, { "job": 118521830091, "time": 132, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12250210120" }, { "job": 118521830093, "time": 159, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12249796215" }, { "job": 118520786232, "time": 163, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12249247319" }, { "job": 118521829939, "time": 80, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12248709398" }, { "job": 118521830108, "time": 71, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12250195033" }, { "job": 118521830035, "time": 61, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12249138561" }, { "job": 118521830019, "time": 58, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12250015431" } ], "_buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271", "_commit": { "id": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "author": "Youhua Chen ", "committer": "cran-robot ", "message": "version 1.3\n", "time": 1542688803 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "youhuachen", "count": 2, "uuid": 35915425 } ], "_userbio": { "uuid": 35915425, "type": "user", "name": "Chen's Lab at CIB", "followers": 0, "description": "Chen's lab has broad interests in biodiversity, conservation and bioinformatics" }, "_downloads": { "count": 198, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/RSE" }, "_mentions": 6, "_searchresults": 19, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/RSE.html" ], "_realowner": "youhuachen", "_cranurl": false, "_releases": [ { "version": "1.2", "date": "2018-10-19" }, { "version": "1.3", "date": "2018-11-20" } ], "_exports": [ "boot.abundance.fun", "boot.incidence.fun", "DetAbu", "DetInc", "f.to.X", "Pred.abundance.rare", "Pred.Fk.BW", "Pred.Fk.Naive", "Pred.Fk.unweighted", "Pred.incidence.rare", "Pred.Qk.BW", "Pred.Qk.Naive", "Pred.Qk.unweighted", "SpEst.Chao1.abun", "X.to.f" ], "_datasets": [ { "name": "CanadaMite", "title": "mite incidence in moss patches of 32 locations of western Canada (Chen et al. 2015)", "object": "CanadaMite", "file": "CanadaMite.rdata", "class": [ "matrix", "array" ], "fields": [ "data1", "data2" ], "rows": 412, "table": true, "tojson": true }, { "name": "HerpetologicalData", "title": "Abundance of herpetofauna in the conserved and human disturbed areas of Mexico (Suazo-Ortuno et al. 2008)", "object": "HerpetologicalData", "file": "HerpetologicalData.rdata", "class": [ "data.frame" ], "fields": [ "Conserved", "Disturbed" ], "rows": 62, "table": true, "tojson": true } ], "_help": [ { "page": "RSE-package", "title": "Number of Newly Discovered Rare Species Estimation", "topics": [ "RSE-package", "RSE" ] }, { "page": "boot.abundance.fun", "title": "Generate a bootstrap abundance-based sample", "topics": [ "boot.abundance.fun" ] }, { "page": "boot.incidence.fun", "title": "Generate a bootstrap incidence-based sample", "topics": [ "boot.incidence.fun" ] }, { "page": "CanadaMite", "title": "mite incidence in moss patches of 32 locations of western Canada (Chen et al. 2015)", "topics": [ "CanadaMite" ] }, { "page": "DetAbu", "title": "Abundance-based data: the estimation of parameters for obtaining the estimation of relative abundances of observed species", "topics": [ "DetAbu" ] }, { "page": "DetInc", "title": "Incidence-based data: the estimation of parameters for obtaining the estimation of detection probabilites of observed species", "topics": [ "DetInc" ] }, { "page": "f.to.X", "title": "Data transformation: from species frequency counts to species abundance data", "topics": [ "f.to.X" ] }, { "page": "HerpetologicalData", "title": "Abundance of herpetofauna in the conserved and human disturbed areas of Mexico (Suazo-Ortuno et al. 2008)", "topics": [ "HerpetologicalData" ] }, { "page": "Pred.abundance.rare", "title": "Abundance-based data: predicting the number of new rare species", "topics": [ "Pred.abundance.rare" ] }, { "page": "Pred.Fk.BW", "title": "Abundance-based data: Bayesian-weight estimator", "topics": [ "Pred.Fk.BW" ] }, { "page": "Pred.Fk.Naive", "title": "Abundance-based data: unweighted naive estimator", "topics": [ "Pred.Fk.Naive" ] }, { "page": "Pred.Fk.unweighted", "title": "Abundance-based data: Unweighted estimator", "topics": [ "Pred.Fk.unweighted" ] }, { "page": "Pred.incidence.rare", "title": "Incidence-based data: predicting the number of new rare species", "topics": [ "Pred.incidence.rare" ] }, { "page": "Pred.Qk.BW", "title": "Incidence-based data: Bayesian-weight estimator", "topics": [ "Pred.Qk.BW" ] }, { "page": "Pred.Qk.Native", "title": "Incidence-based data: unweighted naive estimator", "topics": [ "Pred.Qk.Naive" ] }, { "page": "Pred.Qk.unweighted", "title": "Incidence-based data: Unweighted Estimator", "topics": [ "Pred.Qk.unweighted" ] }, { "page": "SpEst.Chao1.abun", "title": "Species richness estimation", "topics": [ "SpEst.Chao1.abun" ] }, { "page": "X.to.f", "title": "Data transformation: from species abundance data to species frequency counts data", "topics": [ "X.to.f" ] } ], "_rundeps": [], "_score": 2.0569048513364727, "_indexed": true, "_nocasepkg": "rse", "_universes": [ "youhuachen" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3", "date": "2026-10-20T08:07:12.000Z", "distro": "resolute", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/09a33e6050dcb1ba42de4ff250220fb52885cbd50b987ff27fa0061911b2b49d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" }, { "r": "4.6.1", "os": "linux", "version": "1.3", "date": "2026-10-20T08:06:51.000Z", "distro": "resolute", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/319247e380437b2272c4bf6c82e3e3d2c804ce7513492878c8fb11dc2dc7b078", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" }, { "r": "4.5.3", "os": "mac", "version": "1.3", "date": "2026-10-20T08:06:48.000Z", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/bbe6302f35722e5f1df2fc8da16c0ebba546d9405a234d2010b6a4d1fe2acabb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" }, { "r": "4.6.1", "os": "mac", "version": "1.3", "date": "2026-10-20T08:07:06.000Z", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/3f439596d68cb060ee67027aecb11231c6379757e9df2080b6f95d2ceaa999a0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" }, { "r": "4.6.0", "os": "wasm", "version": "1.3", "date": "2026-10-20T08:06:34.000Z", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/543e33aa37e8da680add2c55d52973e4bc556fe31d750aa35575f66c40f378f2", "status": "success", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" }, { "r": "4.7.0", "os": "win", "version": "1.3", "date": "2026-10-20T08:06:09.000Z", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/2dba26f295bf461e91bcecf99196a7214e649e569086aab97552bffa944c62a2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" }, { "r": "4.5.3", "os": "win", "version": "1.3", "date": "2026-10-20T08:05:58.000Z", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/07713f56c981058930ff017dac33cbe529b43830c93d41b1ac58cd4a7b3e1ab0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" }, { "r": "4.6.1", "os": "win", "version": "1.3", "date": "2026-10-20T08:05:55.000Z", "commit": "6a9ab901da9b3e1628b0cca73e06b15554643da9", "fileid": "https://r2.ropensci.org/e486c54f68aa52e26269617b914f964484aa9b621c80b52e3ddd6114671b98da", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/youhuachen/actions/runs/39390528271" } ] }